SIMA – Image analysis from the Losonczy lab
Posted in Software
(This post by the SIMA Team.)
The SIMA (Sequential IMage Analysis) package facilitates analysis of time-series imaging data arising from fluorescence microscopy. The functionality of this package includes:
– correction of motion artifacts
– segmentation of imaging fields into regions of interest (ROIs)
– extraction of dynamic signals from ROIs
The included ROI Buddy software provides a graphical user interface (GUI) supporting the following functionality:
– editing of ROIs resulting from automated segmentation
– registration of ROIs across separate imaging sessions
FYI: We recently released a new version (0.3.1) with some fixes, mostly of Windows-specific issues.
[…] Following up SIMA, which has been covered here before: […]