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	<title>Labrigger</title>
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	<link>http://labrigger.com/blog</link>
	<description>Tips, tricks, hardware, and software for biomedical research</description>
	<lastBuildDate>Thu, 17 May 2012 08:19:17 +0000</lastBuildDate>
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		<title>Troubleshooting noise</title>
		<link>http://labrigger.com/blog/2012/05/17/troubleshooting-noise/</link>
		<comments>http://labrigger.com/blog/2012/05/17/troubleshooting-noise/#comments</comments>
		<pubDate>Thu, 17 May 2012 08:19:17 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[references]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2385</guid>
		<description><![CDATA[&#8220;Okay. I think I&#8217;ve got a lead on the noise we&#8217;ve been troubleshooting. The noise is coming from a broadcast RF source between 2200 and 2500 MHz. Let&#8217;s check with the FCC and see what is allocated to that spectrum to get an idea of where this interference could be coming from.&#8221; &#8220;Right.&#8221; Here&#8217;s the [...]]]></description>
			<content:encoded><![CDATA[<p>&#8220;Okay. I think I&#8217;ve got a lead on the noise we&#8217;ve been troubleshooting. The noise is coming from a broadcast RF source between 2200 and 2500 MHz. Let&#8217;s check with the FCC and see what is allocated to that spectrum to get an idea of where this interference could be coming from.&#8221;</p>
<p align="center"><a href="http://en.wikipedia.org/wiki/Frequency_allocation"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/spectrum.png" alt="" title="Click for source" width="600" height="511" class="aligncenter size-full wp-image-2386" /></a></p>
<p>&#8220;Right.&#8221;</p>
<p>Here&#8217;s the full FCC allocation map&#8211; or at least a snapshot from 2011.</p>
<p align="center"><a href="http://upload.wikimedia.org/wikipedia/commons/d/df/United_States_Frequency_Allocations_Chart_2011_-_The_Radio_Spectrum.pdf"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/spec2.png" alt="" title="Click for source" width="600" height="472" class="aligncenter size-full wp-image-2391" /></a></p>
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		<title>Miscellaneous notes on screws</title>
		<link>http://labrigger.com/blog/2012/05/16/notes_on_screws/</link>
		<comments>http://labrigger.com/blog/2012/05/16/notes_on_screws/#comments</comments>
		<pubDate>Wed, 16 May 2012 18:53:26 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Tips]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2373</guid>
		<description><![CDATA[Terms for metric and English screw size standards These terms are all equivalent for most purposes: metric = ISO metric = ANSI mm English (US) = imperial (UK) = UTS = ANSI inch Major diameter Metric screw sizes are easy to figure out. M3: The &#8220;M&#8221; is for metric, and the &#8220;3&#8243; is the major [...]]]></description>
			<content:encoded><![CDATA[<p align="center"><a href="http://www.flickr.com/photos/hydroscrew/5904547403/in/photostream"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/screw.png" alt="" title="Click for source" width="600" height="386" class="aligncenter size-full wp-image-2382" /></a></p>
<h4>Terms for metric and English screw size standards</h4>
<p>These terms are all equivalent for most purposes:<br />
metric = ISO metric = ANSI mm<br />
English (US) = imperial (UK) = UTS = ANSI inch</p>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/screwMeasurements.png" alt="" title="Screw Measurements" width="350" height="433" class="aligncenter size-full wp-image-2381" /></p>
<h4>Major diameter</h4>
<p>Metric screw sizes are easy to figure out.<br />
M3: The &#8220;M&#8221; is for metric, and the &#8220;3&#8243; is the major (nominal) screw diameter in mm.</p>
<p>English screw sizes are easy for large screw sizes.<br />
1/4-20: 1/4 inch major diameter<br />
For smaller screw sizes, read the next section.</p>
<h4>The numbers for English screws</h4>
<p>Two common sizes of small machine screws are #4-40 and #8-32. What do these numbers mean? As it says above, the second number refers to the thread pitch, and is reported as the threads per inch. However, the first numbers, the major (nominal) diameters, are a bit more complicated. Here&#8217;s how to convert them into inches:<br />
major diameter in inches = 0.060 + (0.013 * <em>N</em>)<br />
Where <em>N</em> is the first number in the name of the screw.</p>
<h4>Thread pitch</h4>
<p>To denote the thread pitch, the two main systems use different measures which are actually <strong>the inverse of each other</strong>. For metric screws, the pitch is measured in <strong>mm per thread</strong>. For example, M3 screws are typically 0.5 mm per thread. For English/imperial screws, the thread pitch is measured in <strong>threads per inch</strong>. For example, 1/4&#8243;-20 screws are 20 threads per inch.</p>
<h4>TLAs (Three Letter Abbreviations)</h4>
<p><strong>UNC, UNF, UNEF</strong><br />
These are from the <a href="http://en.wikipedia.org/wiki/Unified_Thread_Standard">UTS</a> (Unified Thread Standard). It&#8217;s for English/Imperial screw sizes.  Each screw size (nominal diameter/major diameter) is available in either a coarse (UNC), fine (UNF), or extra fine (UNEF) thread pitch; e.g., UNC = UNified thread standard Coarse.</p>
<p><strong>BSW, BSF, BSC</strong><br />
<a href="http://en.wikipedia.org/wiki/British_Standard_Whitworth">BSW</a> stands for British Standard Whitworth. Joseph Whitworth authored the first national screw standard in 1841, and it still carries his namesake. BSF is the variant with fine thread pitch. BSC is a variant used for Cycles (motorcycles and bicycles). UNC is based off of the BSW standard, but with a different shape to the threads. In some applications, UNC and BSW are interoperable. For example, the screw mount at the bottom of SLR cameras for tripod attachement is a BSW 1/4-20 standard, but UNC 1/4-20 screws can often be used in them.</p>
<h4>Fun fact for the day</h4>
<p>One time in London, I needed a fine pitch tap and die set and the cheapest I could find was a BA set, so I bought that. The BA screw standard isn&#8217;t used much any more, but it&#8217;s an interesting standard.</p>
<li>All of the screw sizes are defined in inches, but they come out to be nice round numbers in mm. For example, BA2 has a nominal diameter of 0.1260 inches, which is 3.200 mm.</li>
<li>The standard is not a list of sizes, but rather one base size and then a formula to calculate all of the rest. Size BA0 is the base size, with a 0.2362 inch (6.00 mm) major diameter and 25.38 threads per inch (1 thread per mm). Wikipedia explains the formula for calculating the other sizes (<a href="http://en.wikipedia.org/wiki/British_Association_screw_threads">link</a>).</li>
<p>(<a href="http://www.wikihow.com/Read-a-Screw-Thread-Callout">source</a>)<br />
(<a href="http://eastbay-rc.blogspot.com/2012/05/imperial-screw-sizing.html">via</a>)</p>
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		<title>Cages of a different sort</title>
		<link>http://labrigger.com/blog/2012/05/16/cages-of-a-different-sort/</link>
		<comments>http://labrigger.com/blog/2012/05/16/cages-of-a-different-sort/#comments</comments>
		<pubDate>Wed, 16 May 2012 04:19:47 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Hardware]]></category>
		<category><![CDATA[construction]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2363</guid>
		<description><![CDATA[The last post was about cage-style optomechanics. This post is about Faraday cages. 8020.net In the post about alternative optomechanics, I mentioned 8020.net. They will custom build cages, sending you the cut extruded aluminium pieces, hardware, and fasteners. Paletti USA Paletti is another source to try. They have a range of extruded aluminum profiles and [...]]]></description>
			<content:encoded><![CDATA[<p align="center"><a href="http://omegalabs.eu/"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/omegalabsDotEu.png" alt="" title="Click for source" width="600" height="431" class="aligncenter size-full wp-image-2366" /></a></p>
<p><a href="http://labrigger.com/blog/2012/05/14/cage-systems/">The last post</a> was about cage-style optomechanics. This post is about <a href="http://en.wikipedia.org/wiki/Faraday_cage">Faraday cages</a>.</p>
<h4>8020.net</h4>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/8020.png" alt="" title="8020" width="600" height="437" class="aligncenter size-full wp-image-2367" /></p>
<p>In the post about <a href="http://labrigger.com/blog/2010/06/20/alternative-mechanics/">alternative optomechanics</a>, I mentioned 8020.net. They will custom build cages, sending you the cut extruded aluminium pieces, hardware, and fasteners.</p>
<h4>Paletti USA</h4>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/paletti.png" alt="" title="paletti" width="407" height="405" class="aligncenter size-full wp-image-2370" /></p>
<p><a href="http://www.paletti-usa.com/products/">Paletti</a> is another source to try. They have a range of extruded aluminum profiles and hardware. They also have CAD files for their products, so you can mock it up yourself. Many of their aluminium extrusion profiles can be cut fairly quickly with just a hacksaw, so you can buy lengths and cut to fit your application.</p>
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		<title>Cage systems</title>
		<link>http://labrigger.com/blog/2012/05/14/cage-systems/</link>
		<comments>http://labrigger.com/blog/2012/05/14/cage-systems/#comments</comments>
		<pubDate>Mon, 14 May 2012 11:32:39 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Hardware]]></category>
		<category><![CDATA[construction]]></category>
		<category><![CDATA[optics]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2348</guid>
		<description><![CDATA[Cage systems, like optical rails, are platforms for constructing custom optical systems. Thorlabs&#8217; 16 mm, 30 mm, and 60 mm cage systems are well known (shown above). The numbers refer to the on-center square spacing of the four 6 mm rods that form the backbone of the cages (4 mm rods in the case of [...]]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/tl.png" alt="" title="An example application for Thorlabs&#039; 30-mm cage system." width="600" height="279" class="aligncenter size-full wp-image-2349" /></p>
<p>Cage systems, like optical rails, are platforms for constructing custom optical systems.</p>
<p>Thorlabs&#8217; <a href="http://thorlabs.com/navigation.cfm?Guide_ID=2002">16 mm, 30 mm, and 60 mm cage systems</a> are well known (shown above). The numbers refer to the on-center square spacing of the four 6 mm rods that form the backbone of the cages (4 mm rods in the case of the 16 mm cage system). There are some lesser-known cage systems as well. </p>
<h4>Edmund Optics</h4>
<p align="center"><iframe width="600" height="437" src="http://www.youtube.com/embed/9bZj8PnOzlo" frameborder="0" allowfullscreen></iframe></p>
<p><a href="http://www.edmundoptics.com/mechanics/techspec-optical-cage-system/">Edmund Optics</a> recently launched a line of cage system optomechanics. Many of the pieces may fit (or fit with minimal modification) items in the Thorlabs system since they also use 6 mm rods. More broadly, Edmund Optics actually has an excellent line of optomechanics that includes a lot of products that go beyond what Thorlabs offers. For example, <a href="http://www.edmundoptics.com/mechanics/positioning-stages-slides/linear-ball-bearing-stages/z-axis-brackets-for-ball-bearing-stages/1465">these z-axis brackets</a>.</p>
<h4>Newport</h4>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/newport.png" alt="" title="Baffling." width="574" height="276" class="aligncenter size-full wp-image-2351" /></p>
<p><a href="http://www.newport.com/Open-Cage-Optical-Rail-System/863081/1033/info.aspx">Here is Newport&#8217;s impenetrable cage system</a>. Personally, I think it was a brave choice to hire M.C. Escher as an optomechanical engineer.</p>
<h4>Qioptiq</h4>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/qioptiq.jpg" alt="" title="microbench" width="450" height="482" class="aligncenter size-full wp-image-2357" /></p>
<p> Formerly known as the infinitely more pronounceable Linos, their <a href="http://www.qioptiq-shop.com/en/Optomechanics/LINOS-Microbench/">Microbench</a> and <a href="http://www.qioptiq-shop.com/en/Optomechanics/LINOS-Nanobench/">Nanobench</a> lines are excellent. On paper, they should be compatible with Thorlabs 30 mm and 16 mm cage systems, respectively, but in practice I find that there often needs to be just a little bit of modification&#8211; e.g., widening holes slightly. Maybe this is due to English-to-metric round-off errors, or different tolerances.</p>
<h4>Others</h4>
<p><a href="http://www.cvimellesgriot.com/Products/Opto-Mechanics.aspx">CVI Melles Griot</a> and <a href="http://www.siskiyou.com/">Siskiyou</a> both have excellent lines of optomechanics, but no cage systems as far as I can tell.</p>
<p>Elsewhere on Labrigger:<br />
<a href="http://labrigger.com/blog/2010/06/20/alternative-mechanics/">Alternative Optomechanics</a></p>
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		<item>
		<title>Game on</title>
		<link>http://labrigger.com/blog/2012/05/10/game-on/</link>
		<comments>http://labrigger.com/blog/2012/05/10/game-on/#comments</comments>
		<pubDate>Thu, 10 May 2012 22:04:00 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Hardware]]></category>
		<category><![CDATA[arduino]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2342</guid>
		<description><![CDATA[]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/arduinostack.jpg" alt="" title="We&#039;re stretching the definition of &quot;prototyping&quot;." width="600" height="803" class="aligncenter size-full wp-image-2343" /></p>
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		<title>Firmata for Arduino</title>
		<link>http://labrigger.com/blog/2012/05/10/firmata-for-arduino/</link>
		<comments>http://labrigger.com/blog/2012/05/10/firmata-for-arduino/#comments</comments>
		<pubDate>Thu, 10 May 2012 21:59:21 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Hardware]]></category>
		<category><![CDATA[arduino]]></category>
		<category><![CDATA[electronics]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2318</guid>
		<description><![CDATA[I&#8217;ve referenced Toolduino before. Now I use Firmata more (upon which Toolduino is based). It turns the Arduino into a simple interface, rather than letting it think at all. I find this handy for prototyping up custom interfaces and checking the low level electronics. It&#8217;s cross-platform, of course.]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/firmata.png" alt="" title="firmata" width="560" height="127" class="aligncenter size-full wp-image-2336" /></p>
<p>I&#8217;ve referenced <a href="http://labrigger.com/blog/2010/10/08/arduino-a-simple-microcontroller/">Toolduino</a> before. Now I use <a href="http://firmata.org/wiki/Main_Page">Firmata</a> more (upon which Toolduino is based). It turns the <a href="http://labrigger.com/blog/?s=arduino">Arduino</a> into a simple interface, rather than letting it think at all. I find this handy for prototyping up custom interfaces and checking the low level electronics. It&#8217;s cross-platform, of course.</p>
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		<title>Screw shields, simple pleasures</title>
		<link>http://labrigger.com/blog/2012/05/10/screw-shields-simple-pleasures/</link>
		<comments>http://labrigger.com/blog/2012/05/10/screw-shields-simple-pleasures/#comments</comments>
		<pubDate>Thu, 10 May 2012 21:39:49 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Tips]]></category>
		<category><![CDATA[arduino]]></category>
		<category><![CDATA[electronics]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2332</guid>
		<description><![CDATA[These screw shields make it simple to connect a bunch of stranded wire to an Arduino. This one is available here, or here. It&#8217;s a little thing, but it saves a lot of soldering.]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/photo.jpg" alt="" title="photo" width="600" height="448" class="aligncenter size-full wp-image-2333" /></p>
<p>These screw shields make it simple to connect a bunch of stranded wire to an <a href="http://labrigger.com/blog/?s=arduino">Arduino</a>. This one is available <a href="http://www.dfrobot.com/index.php?route=product/product&#038;filter_name=screw%20shield&#038;limit=100&#038;product_id=468">here</a>, or <a href="http://www.amazon.com/hacktronics-Screw-Shield-for-Arduino/dp/B006G19QC0/">here</a>. It&#8217;s a little thing, but it saves a lot of soldering.</p>
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		<item>
		<title>Beautiful enclosure</title>
		<link>http://labrigger.com/blog/2012/05/08/beautiful-enclosure/</link>
		<comments>http://labrigger.com/blog/2012/05/08/beautiful-enclosure/#comments</comments>
		<pubDate>Wed, 09 May 2012 02:56:05 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[electronics]]></category>
		<category><![CDATA[laser cutting]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2320</guid>
		<description><![CDATA[Beautiful integration of a laser cut enclosure, its contents, and its wiring. (link)]]></description>
			<content:encoded><![CDATA[<p align="center"><a href="http://www.flickr.com/photos/geekphysical/7083988275/in/photostream/"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/enclosure.png" alt="" title="Click for source" width="600" height="354" class="aligncenter size-full wp-image-2321" /></a></p>
<p>Beautiful integration of a laser cut enclosure, its contents, and its wiring. (<a href="http://www.flickr.com/photos/geekphysical/7083988275/in/photostream/">link</a>)</p>
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		<title>GIMP 2.8</title>
		<link>http://labrigger.com/blog/2012/05/06/gimp-2-8/</link>
		<comments>http://labrigger.com/blog/2012/05/06/gimp-2-8/#comments</comments>
		<pubDate>Mon, 07 May 2012 03:30:20 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[analysis]]></category>
		<category><![CDATA[computing]]></category>
		<category><![CDATA[imaging]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2313</guid>
		<description><![CDATA[GIMP is an open source image editing program. You can use it for a lot of the same things Adobe Photoshop is used for. They just released version 2.8 (release notes). In addition to GIMP, be sure to keep up with Inkscape, an open source vector graphics/illustration program. You might be able to do without [...]]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/gimp.png" alt="" title="gimp" width="600" height="323" class="aligncenter size-full wp-image-2315" /></p>
<p><a href="http://www.gimp.org/">GIMP</a> is an open source image editing program. You can use it for a lot of the same things Adobe Photoshop is used for.</p>
<p>They just released version 2.8 (<a href="http://www.gimp.org/release-notes/gimp-2.8.html">release notes</a>).</p>
<p>In addition to GIMP, be sure to keep up with Inkscape, an open source vector graphics/illustration program. You might be able to do without Adobe Illustrator better than you think.</p>
<p>You can even typeset math equations using TeX. (<a href="http://www.timteatro.net/2010/08/05/textext-for-math-in-inkscape/">link</a>)</p>
<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/mathinkscape.png" alt="" title="math in TeX in inkscape" width="600" height="443" class="aligncenter size-full wp-image-2314" /></p>
<p>Both GIMP and Inkscape are available for Windows, Mac OSX, and Linux.</p>
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		<title>Scrivener for the first draft</title>
		<link>http://labrigger.com/blog/2012/05/06/scrivener-for-the-first-draft/</link>
		<comments>http://labrigger.com/blog/2012/05/06/scrivener-for-the-first-draft/#comments</comments>
		<pubDate>Mon, 07 May 2012 03:16:39 +0000</pubDate>
		<dc:creator>L.</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[dissemination]]></category>

		<guid isPermaLink="false">http://labrigger.com/blog/?p=2023</guid>
		<description><![CDATA[Writing a first draft is almost a completely different sport compared to editing and revising. It&#8217;s the most creative part of the writing effort. The work flow incorporates outlines, research notes, references, organization, re-organization, and more. I&#8217;ve recently been trying out a new program for writing first drafts: Scrivener. Scrivener (Win and OSX) is a [...]]]></description>
			<content:encoded><![CDATA[<p align="center"><img src="http://labrigger.com/blog/wp-content/uploads/2012/05/scr.png" alt="" title="scrivner" width="600" height="288" class="aligncenter size-full wp-image-2310" /></p>
<p>Writing a first draft is almost a completely different sport compared to editing and revising. It&#8217;s the most creative part of the writing effort. The work flow incorporates outlines, research notes, references, organization, re-organization, and more. I&#8217;ve recently been trying out a new program for writing first drafts: Scrivener.</p>
<p><a href="http://www.literatureandlatte.com/scrivener.php?show=features">Scrivener</a> (Win and OSX) is a program designed to seemlessly combine word processing with several other writing tools including note organization, outlining, equation editing, and layout. It can work with EndNote (<a href="http://www.youtube.com/watch?v=7BJRsKEwk5o">youtube</a>), too.</p>
<p>It&#8217;s great to have all of these other tools right at hand and integrated. There&#8217;s less task-switching time.</p>
<p>The only shortcoming I can see is the lack of a &#8220;Track Changes&#8221; function like Word has. So it&#8217;s not great for collaboration, but it might reduce the time until the first draft gets done by reducing the time it takes to refer back to notes and other materials.</p>
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