{"id":3173,"date":"2013-06-27T16:48:49","date_gmt":"2013-06-27T20:48:49","guid":{"rendered":"http:\/\/labrigger.com\/blog\/?p=3173"},"modified":"2013-10-04T19:16:55","modified_gmt":"2013-10-04T23:16:55","slug":"openspim-and-openspinmicroscopy-for-light-sheet-microscopy","status":"publish","type":"post","link":"http:\/\/labrigger.com\/blog\/2013\/06\/27\/openspim-and-openspinmicroscopy-for-light-sheet-microscopy\/","title":{"rendered":"OpenSPIM and OpenSpinMicroscopy for light sheet microscopy"},"content":{"rendered":"<p align=\"center\"><a href=\"http:\/\/www.nature.com\/nmeth\/journal\/v10\/n7\/full\/nmeth.2507.html\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup.png\" alt=\"click for source\" width=\"490\" height=\"334\" class=\"aligncenter size-full wp-image-3174\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup.png 490w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup-300x204.png 300w\" sizes=\"auto, (max-width: 490px) 100vw, 490px\" \/><\/a><\/p>\n<p align=\"center\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/spim.png\" alt=\"spim\" width=\"600\" height=\"341\" class=\"aligncenter size-full wp-image-3180\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/spim.png 600w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/spim-300x170.png 300w\" sizes=\"auto, (max-width: 600px) 100vw, 600px\" \/><\/p>\n<p>This month, Nature Methods highlights a couple of open light sheet microscopy projects.<\/p>\n<p>First up is <a href=\"http:\/\/www.nature.com\/nmeth\/journal\/v10\/n7\/full\/nmeth.2507.html\">OpenSPIM<\/a> (pictured above). They have a nice web site set up <a href=\"http:\/\/openspim.org\/Welcome_to_the_OpenSPIM_Wiki\">here<\/a>. They offer <a href=\"http:\/\/openspim.org\/Step_by_step_assembly\">extensively detailed and clear<\/a> directions for assembly. If Ikea sold a light sheet microscope, its directions would be opaque compared to this.<\/p>\n<p>The second one is <a href=\"http:\/\/www.nature.com\/nmeth\/journal\/v10\/n7\/full\/nmeth.2508.html\">OpenSpinMicroscopy<\/a> (pictured below). They have a nice web site set up <a href=\"https:\/\/sites.google.com\/site\/openspinmicroscopy\/\">here<\/a>. It&#8217;s all based on open projects like Arduino and Micromanager, and they offer a full parts list, drawings for custom parts, code, and more.<\/p>\n<p align=\"center\"><a href=\"http:\/\/www.nature.com\/nmeth\/journal\/v10\/n7\/full\/nmeth.2508.html\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup2.png\" alt=\"click for source\" width=\"468\" height=\"296\" class=\"aligncenter size-full wp-image-3175\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup2.png 468w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/setup2-300x189.png 300w\" sizes=\"auto, (max-width: 468px) 100vw, 468px\" \/><\/a><\/p>\n<p align=\"center\"><a href=\"http:\/\/uic.igc.gulbenkian.pt\/micro-dslm.htm\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/ss2.png\" alt=\"click for source\" width=\"445\" height=\"324\" class=\"aligncenter size-full wp-image-3176\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/ss2.png 445w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2013\/06\/ss2-300x218.png 300w\" sizes=\"auto, (max-width: 445px) 100vw, 445px\" \/><\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p align=\"center\"><a href=\"http:\/\/www.nature.com\/nmeth\/journal\/v10\/n7\/full\/nmeth.2507.html\"><\/a><\/p>\n<p align=\"center\">\n<p>This month, Nature Methods highlights a couple of open light sheet microscopy&#8230;<\/p>\n<div class=\"read-more\"><a href=\"http:\/\/labrigger.com\/blog\/2013\/06\/27\/openspim-and-openspinmicroscopy-for-light-sheet-microscopy\/\">Read More<\/a><\/div><\/p>\n","protected":false},"author":1,"featured_media":3176,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[21,36,33],"class_list":["post-3173","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-software","tag-imaging","tag-microscopy","tag-openness"],"_links":{"self":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3173","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/comments?post=3173"}],"version-history":[{"count":7,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3173\/revisions"}],"predecessor-version":[{"id":3323,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3173\/revisions\/3323"}],"wp:featuredmedia":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media\/3176"}],"wp:attachment":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media?parent=3173"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/categories?post=3173"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/tags?post=3173"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}