{"id":3656,"date":"2014-03-08T03:59:37","date_gmt":"2014-03-08T08:59:37","guid":{"rendered":"http:\/\/labrigger.com\/blog\/?p=3656"},"modified":"2014-03-08T03:59:37","modified_gmt":"2014-03-08T08:59:37","slug":"stimfit","status":"publish","type":"post","link":"http:\/\/labrigger.com\/blog\/2014\/03\/08\/stimfit\/","title":{"rendered":"StimFit"},"content":{"rendered":"

\"Stimfit_Screenshot_Linux\"<\/p>\n

Christoph Schmidt-Hieber and his collaborators Guzman and Schlogel have developed a cross platform (Linux, Windows, and OS X) application for analyzing electrophysiology data. Here’s the paper<\/a> (open access). And here’s the code’s website<\/a>.<\/p>\n

A key feature is that there’s a Python shell for scripting. Thus, in addition to being specialized software for analyzing electrophysiology data, the user also has access to the Python ecosystem and all it has to offer.<\/p>\n

The Linux version is shown above. Here’s the OS X version<\/p>\n

\"Stimfit_Screenshot_OSX\"<\/p>\n

And here’s the Windows version<\/p>\n

\"Stimfit_Screenshot_Windows\"<\/a><\/p>\n

On the topic, at a recent lab meeting, Taro Ishikawa’s Taro Tools<\/a> event detection code for Igor Pro came up again. It’s a very versatile set of code, and we’ve used it not only on electrophysiology data (e.g., PSPs and PSCs), but also imaging data. Highly recommended.<\/p>\n","protected":false},"excerpt":{"rendered":"

\n

Christoph Schmidt-Hieber and his collaborators Guzman and Schlogel have developed a cross platform (Linux, Windows, and OS X) application for analyzing electrophysiology data. Here’s the paper<\/a> (open access). And here’s the…<\/p>\n

Read More<\/a><\/div>\n

<\/a><\/p>\n","protected":false},"author":1,"featured_media":3657,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[25,28,33,27,44],"class_list":["post-3656","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-software","tag-analysis","tag-electrophysiology","tag-openness","tag-osx","tag-python"],"_links":{"self":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3656","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/comments?post=3656"}],"version-history":[{"count":2,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3656\/revisions"}],"predecessor-version":[{"id":3661,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3656\/revisions\/3661"}],"wp:featuredmedia":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media\/3657"}],"wp:attachment":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media?parent=3656"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/categories?post=3656"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/tags?post=3656"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}