{"id":3683,"date":"2014-03-18T21:26:13","date_gmt":"2014-03-19T01:26:13","guid":{"rendered":"http:\/\/labrigger.com\/blog\/?p=3683"},"modified":"2014-03-18T21:35:12","modified_gmt":"2014-03-19T01:35:12","slug":"scanbox-free-open-matlab-based-software-for-two-photon-microscopy","status":"publish","type":"post","link":"http:\/\/labrigger.com\/blog\/2014\/03\/18\/scanbox-free-open-matlab-based-software-for-two-photon-microscopy\/","title":{"rendered":"ScanBox &#8211; free, open, MATLAB-based software for two-photon microscopy"},"content":{"rendered":"<p align=\"center\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb1.png\" alt=\"sb1\" width=\"628\" height=\"525\" class=\"alignnone size-full wp-image-3684\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb1.png 628w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb1-300x250.png 300w\" sizes=\"auto, (max-width: 628px) 100vw, 628px\" \/><\/p>\n<p>Dario Ringach has written some nice software for the <a href=\"http:\/\/labrigger.com\/blog\/2013\/09\/30\/fast-resonant-scanning-two-photon-scope-from-ucla\/\">Trachtenberg scope<\/a> mentioned before on Labrigger. They also have put together their own <a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/13\/the-heart-of-scanbox\/\">Cypress PSoC-based hardware box<\/a> to control several parts of the system.<\/p>\n<p>He set up a blog and has several posts on it.<br \/>\n<a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/13\/welcome-to-scanbox\/\">Welcome to Scanbox<\/a><br \/>\n<a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/13\/a-quick-look-at-scanboxs-gui\/\">Scanbox GUI<\/a><br \/>\n<a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/13\/the-heart-of-scanbox\/\">Heart of Scanbox<\/a><\/p>\n<p>He also discusses <a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/18\/synchronize-to-the-laser\/\">why they sync their analog sampling of the PMT signal to the laser pulses<\/a>.<\/p>\n<p><a href=\"http:\/\/neurolabware.squarespace.com\/#\/alps\/\">More info on the scope<\/a>.<\/p>\n<p align=\"center\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb2.png\" alt=\"sb2\" width=\"852\" height=\"640\" class=\"alignnone size-full wp-image-3685\" srcset=\"http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb2.png 852w, http:\/\/labrigger.com\/blog\/wp-content\/uploads\/2014\/03\/sb2-300x225.png 300w\" sizes=\"auto, (max-width: 852px) 100vw, 852px\" \/><\/p>\n","protected":false},"excerpt":{"rendered":"<p align=\"center\">\n<p>Dario Ringach has written some nice software for the <a href=\"http:\/\/labrigger.com\/blog\/2013\/09\/30\/fast-resonant-scanning-two-photon-scope-from-ucla\/\">Trachtenberg scope<\/a> mentioned before on Labrigger. They also have put together their own <a href=\"http:\/\/scanbox.wordpress.com\/2014\/03\/13\/the-heart-of-scanbox\/\">Cypress PSoC-based hardware box<\/a> to control several parts of the system.<\/p>\n<p>He&#8230;<\/p>\n<div class=\"read-more\"><a href=\"http:\/\/labrigger.com\/blog\/2014\/03\/18\/scanbox-free-open-matlab-based-software-for-two-photon-microscopy\/\">Read More<\/a><\/div><\/p>\n","protected":false},"author":1,"featured_media":3684,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[7],"tags":[18,38,21,26,36,33,47],"class_list":["post-3683","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-software","tag-behavior","tag-calcium-imaging","tag-imaging","tag-matlab","tag-microscopy","tag-openness","tag-two-photon"],"_links":{"self":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3683","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/comments?post=3683"}],"version-history":[{"count":3,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3683\/revisions"}],"predecessor-version":[{"id":3688,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/posts\/3683\/revisions\/3688"}],"wp:featuredmedia":[{"embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media\/3684"}],"wp:attachment":[{"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/media?parent=3683"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/categories?post=3683"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/labrigger.com\/blog\/wp-json\/wp\/v2\/tags?post=3683"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}