Tag: calcium imaging

Local cross corr images

One key step in analyzing data form calcium imaging experiments is segmentation (i.e., drawing regions of interest, ROIs). There have been…



Commoditizing population calcium imaging analysis

More open source software to check out.

Two-Photon Processor and SeNeCA – A freely available software package…



Going back to Cali

No. I don’t think so.
Anyways, CaliCode is a resource for population calcium imaging. It covers topics from inferring action potential trains from imaging data (hat tip to JV), to image processing and topical papers….



Photoswitchable GECI

Many red fluorescent proteins go through a green fluorescent stage prior to becoming fully folded into their mature red fluorescent state. In fact, some proteins can be photoswitched in and/or out of their mature red…



Tsien’s VoltageFluors

Roger Tsien’s lab recently published the new generation voltage sensitive dye they were presenting at SfN: VoltageFluors. As often when then Tsien Lab takes on a new field, they start by taking a completely…



Spectra viewing app for iOS

Zeiss released an iOS app for viewing spectra.

No Android version yet, but Johannes Amon said:

of course I can’t tell you any specifics but at the moment we are evaluating a native…



GECOs – New proteins for calcium imaging

Post by Christian Wilms

Call me old-fashioned, but I’m a big fan of small organic calcium indicators (e.g., Oregon Green BAPTA 1). Yes, genetically encoded calcium indicators (GECIs) have many advantages:…