Impact factor = subscription price
Posted in Tips
For the next two weeks, you can get a personal 1 year subscription to any of the Nature publications for a price…
Tag: dissemination
CDF: Mathematica’s PDF
Posted in Software
Wolfram is pushing a new document format called Computable Document Format (CDF). It looks like PDF + embedded Java apps.
One the one hand, there’s the xkcd viewpoint. This is basically just another step in…
Papers per person per year
Posted in Uncategorized
The subject of prolificacy came up in lab the other day. A study from the 80s (pdf) plotted the number of papers from a lab versus the number of people…
Structured Illumination, pt. 2
This is a long post. If you’re in a rush, then just read these first two paragraphs.
One of the early posts on this blog was about …
HDF5 + XML = SDCubes
Posted in Software
A paper on data organization just came out in Nature Methods (Millard et al. 2011, commentary by Swedlow et al.). They believe, as do I, that using XML schema to…
OpenOptogenetics
When Karl Deisseroth started publishing his work on Channelrhodopsin-2, he set up a website to share the resources, including plasmid information, protocols for expression systems, and hardware details. His site, optogenetics.org, is…
Tips for giving talks
Posted in Tips
This is just a quick post to point people over to Matt Might’s excellent post full of tips on how to give a good scientific talk. I second his endorsements of Keynote and…
Pubmed limbo
Posted in Uncategorized
In my experience, PubMed works beautifully the vast majority of the time. It does an excellent job parsing search terms and they’re always adding new features (e.g., you can search using full…
Future Publishing
Posted in Tips
We used to just tell stories. Then we had monks copy manuscripts by hand. Later, movable type made printing easy. That brings us up to about…
DIY open access
Posted in Uncategorized
Even if you publish in a “closed” journal, you are typically allowed to post the PDF of your article on your…
Colorblind-proof two color scheme
Posted in Software
The usual color scheme for showing co-localization is to overlay a red image and a green image and have the yellow portions show the sites of co-localization. This is problematic since red-green colorblind…
Open Hardware Summit
Posted in Hardware
In academia, we have some nice benefits when it comes to intellectual property. Just about everything we do qualifies as scholarship, and so we take ample advantage of that portion of fair…
Color-code terms in equations
Posted in Tips
This is such a simple and powerful trick, I don’t know why I hardly ever see it used. When giving an equation during a talk or in a paper, typically that equation is best understood as a series of terms. Those in your audience who are familiar with the terms, like yourself, will instantly recognize…
Open Science Summit: This weekend
Posted in Tips
Thursday through Saturday this week, there is an Open Science Summit in Berkeley. The schedule includes Josh Perfetto from the OpenPCR group I’ve mentioned before, Martha Bagnell from The Third…
Daltonize your figures for the colorblind audience members
Posted in Tips
I’m revising figures for a paper right now and the editors suggested I avoid red-green color schemes. In the US, 7% of men are colorblind, usually red-green colorblind. The editors suggested …
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