Headplate designs
Posted in Hardware
Multiphoton imaging with micron resolution in living animals can be challenging…
Tag: dissemination
LabMaker – a retail source for some open source projects
Posted in Hardware
LabMaker sells parts, kits, and assemblies for open source neuroscience tools, including the UCLA MiniScope and Crystal Skull “coverslips”.
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Actually useful comments on scientific blogging
Posted in Tips
I came across Rachel Thomas’ comments on blogging in the context of machine learning, and they’re good. I’ve been telling people things like this for awhile now and Rachel distills them better than I…
Pre-preprint: blogging a project
Posted in Uncategorized
SLAB is trying something new with one project in the lab. Prior to drafting a preprint, we’re blogging the project and sharing the results and analysis. We invite anyone to comment…
New category of posts: papers
Posted in Papers
In the past, Labrigger has only rarely posted about relevant papers. That ends today. Now there’s a new post category for papers, and it’ll be used to highlight publications that are of potential interest to…
Proper export for MATLAB figures
Posted in Software
Getting nice figures out of MATLAB can be a challenge. Sometimes it’s fine, but if you’ve hit upon a figure that simply isn’t exporting nicely (bad vector rendering, lost transparency, etc.), check out the…
Colorbrewer for color schemes
Posted in Tips
Colorbrewer was designed for cartography, but is useful for figure color schemes and look up tables (LUTs). The web interface is slick, offers an immediate preview, and the look up table can be exported….
Field of view = 3.5 mm with cellular resolution
Posted in Hardware
In this preprint, Stirman et al. report achieving a 3.5 mm field of view with 2-photon excitation with cellular resolution. The design involves custom scan optics and a custom objective built in the…
What’s your favorite LUT?
Posted in Software
Parula is the new default colormap for MATLAB (namesake above, actual map below). It probably collapses to grey better than jet (which is good for colorblind readers).
You aficionados care dearly about…
Reminder: SfN Short Course
Posted in Tips
If you like Labrigger, you should register for this Short Course at the SfN meeting.
Short Course #1: Advances in Multineuronal Monitoring of Brain Activity
Spencer Smith will be talking about the work…
Cubehelix color scheme
Posted in Software
Cubehelix is a color scheme that retains contrast as it is desaturated (top), as opposed to a more typical rainbow scheme (bottom). It’s great for look-up-tables (LUTs).
Dave Green’s web site has multiple…
Pitch in and share!
Posted in Tips
Don’t be shy.
If you have a tip to share, however small or big, please do so using the new link above.
You can do it anonymously, if you like. Or you can…
PubPeer browser plugins for PubMed
Posted in Software
PubPeer has released browser plugins that add a line to PubMed results if there are comments on PubPeer for those publications. It looks like the example above. The install took less than 10…
Preserve your rights – Scholar’s Copyright Addendum Engine
Posted in Tips
Creative Commons‘ science section has an easy-to-use web page that generates a PDF form you can attach to the publisher’s copyright form to ensure you reserve certain rights.
Previously…
Design tips for data tables
Posted in Tips
Most scientists have adopted minimalistic design principles for graphs. We still sometimes see 3D bar charts, but it’s rare. Data tables are another story. Sometimes journals take the formatting of data tables out of the hands of the authors. Perhaps they recognize that it’s…