ScanBox – free, open, MATLAB-based software for two-photon microscopy

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Dario Ringach has written some nice software for the Trachtenberg scope mentioned before on Labrigger. They also have put together their own Cypress PSoC-based hardware box to control several parts of the system.

He set up a blog and has several posts on it.
Welcome to Scanbox
Scanbox GUI
Heart of Scanbox

He also discusses why they sync their analog sampling of the PMT signal to the laser pulses.

More info on the scope.

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