Digital cameras can have global shutters or rolling shutters (some cameras can operate in both modes). Global shutters are preferable for periodic applications, including intrinsic imaging, because rolling shutters can cause artifacts. This article does a nice job of explaining the artifacts that…
This open source two-photon microscope system is adaptable for both slice (with substage detection) and in vivo experiments, and is built with largely COTS parts. The paper is a very nice resource.
See also, designs…
ScanImage 5 supports resonant scanning with a wide range of hardware. So custom rigs can add resonant scanning pretty easily, while sticking with ScanImage for acquisition.
Can anyone suggest a nice way to store lenses? Ideas about storage containers and cabinets, and ideas about overall organization are all welcome.
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Our friend Christian Wilms tipped us to Austin Blanco’s blog, which has some posts you all might be interested in:
Characterizing unknown optical components
A few notes on Arduinos, their timers, and using them with…
UNC-Chapel Hill’s Computer Integrated Systems for Microscopy and Manipulation team released a new version of their popular ImageSurfer software. All 64-bit, with versions for Linux, OSX, and Windows.
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Raspberry Pi is the most popular mini computer right now, but there are other options.
SolidRun sells two. The first is a sleek cube called the CuBox-i (pictured above). The second is a barebones board, the…
The Raspberry Pi is a handy tool, but it has some quirks. One quirk is that there is no internal clock with a battery backup (something most real PCs have). Instead, it syncs with online clocks…
Federal RePORTER is a grant search engine that covers NIH, NSF, USDA, EPA, etc. The most recent year available is 2013, so you still have to go to the individual institutes’ sites. But handy nonetheless.
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Parula is the new default colormap for MATLAB (namesake above, actual map below). It probably collapses to grey better than jet (which is good for colorblind readers).
You aficionados care dearly about LUTs,…
(This post by the SIMA Team.)
The SIMA (Sequential IMage Analysis) package facilitates analysis of time-series imaging data arising from fluorescence microscopy. The functionality of this package includes:
– correction of motion artifacts
– segmentation of imaging fields into…
If you like Labrigger, you should register for this Short Course at the SfN meeting.
Short Course #1: Advances in Multineuronal Monitoring of Brain Activity
Spencer Smith will be talking about the work SLAB…
Theo Walker has a very nice open syringe pump design that has some advantages over another open syringe pump project we’ve covered (though the latter is less expensive).
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