FocusStack and StimServer for MATLAB
Posted in Software
Dylan Muir and Bjorn Kampa created some MATLAB code for two-photon calcium imaging experiments. First up is FocusStack, which provides a suite of analysis tools. Next up is StimServer, which coordinates visual stimulus generation and presentation. The paper is open access.
In particular, Dylan’s MATLAB functions MappedTensor and TIFFStack are worth checking out. Both provide ways to access large files on disk without having to load everything into memory at the same time.