SpikeGadgets extracellular recording and open source software
SpikeGadgets makes hardware and software for extracellular array recording.
They make nice looking hardware, both for recording from arrays, and for controlling experiments.
…
Tag: python
Python ephys and calcium imaging analysis code
Posted in Software
Andrew Giessel wrote some analysis code in Python when he worked in the Datta lab. He has since moved on to another venture, but he open-sourced the code. There are import routines for data from ScanImage…
SIMA – Image analysis from the Losonczy lab
Posted in Software
(This post by the SIMA Team.)
The SIMA (Sequential IMage Analysis) package facilitates analysis of time-series imaging data arising from fluorescence microscopy. The functionality of this package includes:
– correction of motion artifacts
– segmentation of imaging fields…
FlyMAD
This tip comes from John Stowers. He and his colleagues developed an open source opto- and thermo- genetic system for targeting freely moving Drosophila with lasers.
He wrote a long post discussing some of…
StimFit
Posted in Software
Christoph Schmidt-Hieber and his collaborators Guzman and Schlogel have developed a cross platform (Linux, Windows, and OS X) application for analyzing electrophysiology data. Here’s the paper (open access). And here’s the code’s…
