Local cross corr images
Posted in Software
One key step in analyzing data form calcium imaging experiments is segmentation (i.e., drawing regions of interest, ROIs). There have been some…
Tag: calcium imaging
Commoditizing population calcium imaging analysis
Posted in Software
More open source software to check out.
Two-Photon Processor and SeNeCA – A freely available software package to process…
Going back to Cali
No. I don’t think so.
Anyways, CaliCode is a resource for population calcium imaging. It covers topics from inferring action potential trains from imaging data (hat tip to JV), to image processing and topical papers.
P.S….
Photoswitchable GECI
Posted in Tips
Many red fluorescent proteins go through a green fluorescent stage prior to becoming fully folded into their mature red fluorescent state. In fact, some proteins can be photoswitched in and/or out of their mature red state,…
Tsien’s VoltageFluors
Posted in Tips
Roger Tsien’s lab recently published the new generation voltage sensitive dye they were presenting at SfN: VoltageFluors. As often when then Tsien Lab takes on a new field, they start by taking a completely new…
Spectra viewing app for iOS
Posted in Software
Zeiss released an iOS app for viewing spectra.
No Android version yet, but Johannes Amon said:
of course I can’t tell you any specifics but at the moment we are evaluating a native port…
GECOs – New proteins for calcium imaging
Posted in Tips
Post by Christian Wilms
Call me old-fashioned, but I’m a big fan of small organic calcium indicators (e.g., Oregon Green BAPTA 1). Yes, genetically encoded calcium indicators (GECIs) have many advantages: targeting…