Python IDEs for science
Posted in Software
xcorr has done a nice series of reviews of IDEs for scientific Python: First, Second, Third
Previously
Online scientific Python
NEURON and Python
…
Tag: analysis
Commoditizing population calcium imaging analysis
Posted in Software
More open source software to check out.
Two-Photon Processor and SeNeCA – A freely available software package to process…
Going back to Cali
No. I don’t think so.
Anyways, CaliCode is a resource for population calcium imaging. It covers topics from inferring action potential trains from imaging data (hat tip to JV), to image processing and topical papers….
Make MATLAB text you
Posted in Software
Online Scientific Python: Wakari
Posted in Software
If you like Python, want to analyze data online, and are interested in a standardized environment that can be easily shared, read on:
Continuum Analytics is offering a new beta: Wakari. You can register…
SOFA, open stats
Posted in Software
If you’d like to read some deep, wide-ranging philosophical discussions about R, an open statistics software package, then I wonder why we’re friends. But since we are, here are some links, you psychopath:
“R is a programming language missing a GUI”…
GIMP 2.8
Posted in Software
GIMP is an open source image editing program. You can use it for a lot of the same things Adobe Photoshop is used for.
They just released version 2.8 (release notes).
In addition to GIMP,…
Nature article on releasing source code
Posted in Software
Nature just published a 4-page perspective article on the important of releasing the source code for programs used in scientific research. The authors emphasize the importance of reproducibility for results that…
OpenElectrophy – for multielectrode recordings
Posted in Software
OpenElectrophy is a somewhat mature, actively developed, open source program for analyzing data from multielectrode recordings. It makes heavy use of Python and SQL and is developed by a team of French researchers including…
MATLAB Mobile for iOS
Posted in Software
On the topic of iOS apps, MATLAB has released v3.0 of their mobile app. The most apparent changes are UI usability improvements.
(MATLAB link, App Store link)
…
Software for visual psychophysics
Posted in Software
This site has a nice big list of software for visual psychophysics. It’s very extensive and includes free as well as commercial solutions: visual stimuli, analysis, teaching, hardware, and more.
…
Visualizations
Posted in Tips
Visual.ly recently posted a list of the top visualizations of 2011. This is a map of the world in which Twitter tweets…
NEURON + Python in OSX
Posted in Software
Post by Christoph Schmidt-Hieber
+
Here are some relatively pain-free instructions to get NEURON to run with Python support on OS X.
1. Install XCode 3.x. XCode 4 will not work (*). You…
MATLAB Mobile 2.0: cloud computing
Posted in Software
MATLAB Mobile is a way to use MATLAB from an iOS device. It’s cute, but a bit odd, because you used to need to have MATLAB running on your own server in order…
Taro Tools and PPT for Igor Pro
Posted in Software
Last Friday afternoon to Saturday morning I had a marathon data analysis session. It was almost completely in Igor Pro. I used TaroTools so heavily that I dropped Taro another thank you note. It’s really saved me so much programming and analysis time. I highly recommend checking it out. Prof. Ishikawa…
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