Andrew Giessel wrote some analysis code in Python when he worked in the Datta lab. He has since moved on to another venture, but he open-sourced the code. There are import routines for data from ScanImage and…
George McNamara recently posted a comment on spectra, which referenced this online app which is handy.
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UNC-Chapel Hill’s Computer Integrated Systems for Microscopy and Manipulation team released a new version of their popular ImageSurfer software. All 64-bit, with versions for Linux, OSX, and Windows.
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Parula is the new default colormap for MATLAB (namesake above, actual map below). It probably collapses to grey better than jet (which is good for colorblind readers).
You aficionados care dearly about …
(This post by the SIMA Team.)
The SIMA (Sequential IMage Analysis) package facilitates analysis of time-series imaging data arising from fluorescence microscopy. The functionality of this package includes:
– correction of motion artifacts
– segmentation of imaging fields…
Scheme-it is an online electronics schematics/design tool that is integrated with Digikey’s catalog. This way, you can skip a step and go directly from design to order, without having to spend time sourcing parts….
Cubehelix is a color scheme that retains contrast as it is desaturated (top), as opposed to a more typical rainbow scheme (bottom). It’s great for look-up-tables (LUTs).
Dave Green’s web site has multiple implementations…
OpenLabTools is a new initiative at Cambridge University, using engineering students to develop modular lab equipment.
The OpenLabTools initiative aims to provide a forum and knowledge centre for the development of low cost and open…
This tip comes from John Stowers. He and his colleagues developed an open source opto- and thermo- genetic system for targeting freely moving Drosophila with lasers.
He wrote a long post discussing some of…
Windows 8.1 has some interesting built-in support for 3D printing. They’re treating it a lot like 2D printing, even including a print preview.
Labrigger still recommends outsourcing 3D printing because the technology is improving…
Migrating back to Windows after years of using OSX, there are some features I miss.
Default Folder X (link)
Right click on the file name in the title bar to find out what folder that file…
Software from Stephan Meyer Zum Alten (Gilbert lab, Rockefeller):
I put together a sort of Navigator for Janelia Farms ScanImage Two Photon control software, which we use a lot in our lab. There was no way…
This the favorite tip Labrigger has received this week. Here it is, unedited, and in its entirety:
I often use autohotkey for repetitive file naming and key remapping when I am forced to use clunky software…
Labrigger talked about the Open-SPIM project last year. Since then, the project has proven to be vibrant and strong, with continuous improvements.
Recently Stephan Preibisch came up with a multiview deconvolution algorithm (data pictured…
PubPeer has released browser plugins that add a line to PubMed results if there are comments on PubPeer for those publications. It looks like the example above. The install took less than 10 seconds.
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